So Fred and I have been crunching the numbers and we've come up with a better option. We're going to go with DBA T2 slotted rotors, "they're Australian mate!!!",with HPS pads. The HP Plus are great but very dusty.
I sent a message to MM about the MC size and they said not to mix and match brake systems. Someone obviously missed the fact that the GT & Cobra use the same rear calipers with a 38mm piston. The only other difference, from the point of the hydraulic system, is the dual 40mm piston in the Cobra versus the twin 45mm pistons in the GT's PBR calipers.
Therefore, it makes sense, to me, to use the same MC bore size as the 2000 GT which, according to my research has a 1" bore. So it looks like the '93 Cobra 1" bore MC is the winner. Any thoughts???